BIOBASE GmbH/TransfacInstall - Insilicogen, Inc.

TRANSFAC Installation

서버 구성요건
1. Apache Web server (>= 1.2.x)
2. Perl Interpreter (>= 5.004)
download file
1. README.txt this files
2. CHANGES.txt changes between the current and the previous release
3. install.pl global installation script
4. TFP_x.x_linux.tar.gz installation archive for Linux

Installation

$ perl install.pl 

#########################################################################
#
#     Installation routine for TRANSFAC Professional 2008.2
#
#     Copyright (C), Biobase GmbH, 2000-2005
#
#########################################################################
 
Please supply some necessary information to install TRANSFAC Professional
at your site!
In most cases, defaults are given in brackets <>, just hit RETURN to use
these defaults.
Some of the information needed can be found in the configuration file
of your web-server (httpd.conf).
 
You can always press "Ctrl C" to stop this installation routine.
 
Hit "return" to continue;
 
-----------------------------------------------------------------------
For running this script safely, you should be sure, that some tools run
properly. You need the following commands:
-----------------------------------------------------------------------
    gunzip -c file_name.tar.gz > file_name.tar
and -------------------------------------------------------------------
    tar -xf file_name.tar
-----------------------------------------------------------------------
 
You can always press "Ctrl C" to stop this installation routine.
 
Hit "return" to continue;
 
What is your PERL binary ?
</usr/bin/perl> 
Your PERL binary is:
/usr/bin/perl        [y|n] ? <y> 
What is the hostname (or IP-Address) of your web server ?
<dajeong.rda.go.kr> 192.168.1.211
Your hostname (or IP-Address) is:
192.168.1.211                     [y|n] ? <y> 
What is the SERVER_ROOT directory of your web server?
</usr/local/apache> /usr/lib
Your SERVER_ROOT directory is in:
/usr/lib                         [y|n] ? <y> 
What is the CGI-BIN directory of your web server?
</usr/lib/cgi-bin> 
The CGI-BIN directory of your web server is:
/usr/lib/cgi-bin                             [y|n] ? <y> 
What shall the TRANSFAC cgi-bin subdirectory be ?
</usr/lib/cgi-bin/biobase/transfac/2008.2> 
Your TRANSFAC cgi-bin subdirectory is:
/usr/lib/cgi-bin/biobase/transfac/2008.2 [y|n] ? <y> 
What will be your cgi-bin URL path to the database ?
</cgi-bin/biobase/transfac/2008.2> 
Your TRANSFAC cgi-bin URL path is:
/cgi-bin/biobase/transfac/2008.2   [y|n] ? <y> 
What is the HTDOCS directory of your web server?
</var/www> 
Your HTDOCS directory is in:
/var/www             [y|n] ? <y> 
What shall the TRANSFAC document directory be ?
</var/www/biobase/transfac/2008.2> 
Your TRANSFAC document directory is:
/var/www/biobase/transfac/2008.2 [y|n] ? <y> 
What will be your URL path to the database ?
</biobase/transfac/2008.2> 
Your TRANSFAC document URL path is:
/biobase/transfac/2008.2            [y|n] ? <y> 
 
------------------------------------------------

User Authentication

host (IP address) 등록

$cd /usr/lib/cgi-bin/biobase/transfac/2008.2/etc/conf 
root:/usr/lib/cgi-bin/biobase/transfac/2008.2/etc/conf # vi hosts.list 
192.168.1.211
127.0.0.2
192.168.1.207

user 등록

$cd /usr/lib/cgi-bin/biobase/transfac/2008.2/bin 
$htpasswd2 user.list [userID]
$etc/init.d/apache2 restart

User Authentication

$vi /etc/apache2/sites-available/default 

 # changing of  "None" to "AuthoConfig"   at ScriptAlias----------------
   ScriptAlias /cgi-bin/ /usr/lib/cgi-bin/
   AllowOverride None => AllowOverride AuthConfig
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